Welcome to Nadiatools’s documentation!

Nadiatools is a suite of bioinformatic tools for analyzing and visualizing single-cell and single-nucleus RNA-seq data produced by Nadia instrument from Dolomite Bio.

Introduction

• Overview
  • What we can do
  • Noticeable features
  • Command description

Installation

• System requirements
  • System
  • Dependencies
• Installation
  • Install by conda
  • Install by docker

Tutorials

• Getting started
  • Introduction
  • Download sample data
  • Prepare reference
  • Reads quality control
  • Align and quanfify gene expression
  • Process gene expression matrix

Commands

• nadia-ref
  • Overview
  • How it works
  • Input
  • Output
  • Usage examples
  • Argument details
• nadia-reads
  • Overview
  • How it works
  • Input
  • Output
  • Usage examples
  • Argument details
• nadia-quant
  • Overview
  • How it works
  • Input
  • Output
  • Usage examples
  • Argument details
• nadia-process
  • Overview
  • How it works
  • Input
  • Output
  • Usage examples
  • Argument details
• nadia-combine
  • Overview
  • How it works
  • Input
  • Output
  • Usage examples
  • Argument details

About

• Frequently Asked Questions
• Release notes
• License
• Citation